ode-model

This repository deals with analyzing various Neural Network approaches and finding the one with the most accurate reconstruction of motion captured trajectories recorded with missing markers in softwares like Vicon Nexus

lstm rnn motion-capture reconstruction ode-model motion-capture-data wasserstein-gan vicon tcn missing-markers ode-rnn latent-odes

Updated Nov 7, 2019
Python

Shvartsman-Lab / vertX3D

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ode-model lbfgs vertex-model

Updated Jul 2, 2019
C++

florianst / traploading

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ODE solvers simulating the loading of atoms into a combined magnetic and optical dipole trap

ode-model atomic-physics dipole-trapping

Updated Mar 2, 2019
Python

sg-s / model

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Elegant Mathematica-style model manipulation, fitting and exploration in MATLAB.

matlab mathematica manipulate parameter-search ode-model parameter-tuning model-fitting

Updated Sep 19, 2017
MATLAB

abhogan / rsv_model_fitting

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Code for fitting SEIRS transmission models for respiratory syncytial virus (RSV) to incidence data

fitting ode-model respiratory

Updated Nov 28, 2018
MATLAB

lathestudent / Numerical-IVP-Methods

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Evaluating numerical methods for approximating ODE using Python

python3 ordinary-differential-equations numerical-methods numerical-analysis ode-model ode-solver ivp ivp-methods

Updated Aug 16, 2018
Python

juanvillada / Consortia-Dynamics-R

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Modeling the dynamics of microbial communities (ODEs)

r reproducible-research microbial-communities ode-model microbial-ecology

Updated Jan 18, 2020
R

asack20 / skydiver-simulation

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High-Altitude Skydiver Simulation

physics matlab numerical-methods physics-simulation ode-model tufts skydiving

Updated Dec 21, 2018
MATLAB

danielduyvo / kinetics_model

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A model for approximating concentrations of beta amyloid aggregates over time.

protein alzheimers-disease ode-model protein-protein-interaction

Updated May 26, 2020
R

abhogan / rsv_models

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Ordinary differential equation dynamic models for respiratory syncytial virus (RSV) transmission

ode-model respiratory

Updated Nov 28, 2018
MATLAB

openPfizer / vpop-gen

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Virtual population generation, fitting, and benchmarking.

genetic-algorithm global-optimization qsp ode-model metropolis-hastings monte-carlo-sampling biological-modeling quantitative-systems-pharmacology virtual-population acceptance-rejection

Updated Jun 29, 2018
MATLAB

Leandroscholz / Hypha_WMTS

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Implementations of the hyphal growth model of Balmant et al., PLoS One, 10(3), 2015.

fungi mathematical-modelling ode-model

Updated Oct 26, 2018
MATLAB

AnnaShcher / abm_continuous_malaria_model

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Agent-based and continuous Malaria Modelling

agent-based-modeling ode-model disease-prediction disease-modeling malaria-prediction malaria-control

Updated Aug 24, 2020

bigfatbernie / IBLmodellingDEs

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Modelling with Differential and Difference Equations - Textbook

mathematics ode uoft textbook differential-equations mathematical-modelling university-of-toronto ode-model

Updated Jul 29, 2020
TeX

Roshni1999 / Computational-Systems-Biology-2020

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Semester course project- Computational Systems Biology (BT5240)

automaton ode-model cell-cycle cell-population

Updated Aug 18, 2020
MATLAB

shraddhapuntambekar / Mathematical-model-for-sumoylation

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Mathematical model for sumoylation

mathematica mathematical-modelling matlab-codes mathematical-biology ode-model steady-state-analysis timecourse-analysis parameter-variation

Updated Jul 20, 2020
Mathematica

andreigasparovici / sir-model

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SIR model visualization

python differential-equations ode-model sir-model

Updated Jul 11, 2020
Python

biomystery / TLR4_signaling_model

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Code and data for TRL4 signaling paper.

optimization matlab mathematical-modelling stochastic-processes ode-model sampling-distribution single-cell-analysis

Updated Aug 19, 2020
Mathematica

BuckanovNikita / MathematicalModeling

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Математическое моделирование. МИЭТ

mathematical-modelling ode-model miet

Updated Jan 21, 2019
Jupyter Notebook

obsessedyouth / simulacra

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(In progress) Learning about optimizing objective functions, efficient modeling and simulation algorithms in computational science.

simulation optimization modeling ode pde ode-model ode-solver pde-solver

Updated Sep 12, 2020
Python

PratipRana / Strain_specific_Fibril_Propagation-

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Dean, Dexter N., et al. "Strain-specific Fibril Propagation by an Aβ Dodecamer." Scientific reports 7 (2017): 40787.

matlab alzheimers-disease ode-model protein-aggregation

Updated Sep 19, 2017
MATLAB

bnetlab / Alzheimer_Ab_switching_ode_model

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ODE simulation of Abeta on-off pathway switching

alzheimers-disease ode-model protein-aggregation

Updated Feb 19, 2020
MATLAB

vislupus / mathematical-modeling

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Variety of interesting mathematical models in Python

calculus jupyter-notebook ode differential-equations ordinary-differential-equations numerical-methods ode-model attractors second-order-differential-equations first-order

Updated Jun 6, 2020
Jupyter Notebook

biomystery / TNF_regulation

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Collabration with Andrew. Model's coding for TNF regulation in LPS, CpG and PIC

matlab numerical-optimization ode-model

Updated Aug 19, 2020
MATLAB

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