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@AstraZeneca

AstraZeneca

Data and AI: Unlocking new science insights

Pinned

  1. awesome-explainable-graph-reasoning Public

    A collection of research papers and software related to explainability in graph machine learning.

    1.9k 127

  2. kallisto Public

    Efficiently calculate 3D-atomic/molecular features for quantitative structure-activity relationship approaches.

    Python 46 18

  3. chemicalx Public

    A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

    Python 611 75

  4. rexmex Public

    A general purpose recommender metrics library for fair evaluation.

    Python 260 22

  5. SubTab Public

    The official implementation of the paper, "SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning"

    Python 102 14

  6. onto_merger Public

    OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.

    HTML 78 4

Repositories

  • magnus-core Public

    Core package of magnus

    Python 8 Apache-2.0 3 15 (1 issue needs help) 0 Updated Feb 24, 2023
  • maraca Public

    R package for the creation of "maraca" plots

    R 0 0 0 1 Updated Feb 24, 2023
  • magnus-extensions Public

    Extensions packages for magnus

    Python 2 Apache-2.0 0 0 0 Updated Feb 24, 2023
  • survextrap-excesshazards Public

    Demonstration of excess hazard and excess hazard cure models for survival extrapolation

    R 0 Apache-2.0 0 0 0 Updated Feb 23, 2023
  • jazzy Public

    Efficient calculation of hydration free energies and hydrogen-bond strengths.

    Python 20 0 0 7 Updated Feb 21, 2023
  • KAZU Public

    Fast, world class biomedical NER

    Python 18 Apache-2.0 2 1 0 Updated Feb 17, 2023
  • kgem-in-drug-discovery Public

    Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

    Python 14 Apache-2.0 6 0 1 Updated Feb 13, 2023
  • biomedical-kg-topological-imbalance Public

    Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)

    Jupyter Notebook 11 Apache-2.0 0 0 1 Updated Feb 13, 2023
  • StarGazer Public

    StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a novel target prioritization scoring system in an interactive Python-based Streamlit dashboard. StarGazer displays target prioritization scores for genes associated with 1844 phenotypic traits.

    Python 23 Apache-2.0 8 1 10 Updated Feb 11, 2023
  • peptide-tools Public

    Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients.

    Python 8 Apache-2.0 2 0 0 Updated Feb 8, 2023
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