Here are
21 public repositories
matching this topic...
A Go package for engineering organisms.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Updated
Sep 28, 2022
Python
Software for prediction of plasmid sequences in metagenomic assemblies
Updated
Jun 28, 2021
Python
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Updated
Apr 19, 2022
Python
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Updated
Sep 20, 2022
Python
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
Updated
Feb 2, 2021
Python
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
Updated
Nov 7, 2018
JavaScript
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
Updated
Sep 5, 2022
Python
Updated
Feb 10, 2020
Python
Modular cloning simulation with the MoClo framework in Python
Updated
May 3, 2022
Python
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Updated
Nov 19, 2018
Python
Software to identify known plasmid sequence from metagenomic assembly using Minhash
repository-based plasmid design
Plasmid assembly, gene identification and annotation pipeline
Updated
Jun 1, 2022
Nextflow
Script to obtain plasmid id from WGS data using bowtie2 to map
Updated
Sep 8, 2018
Python
An ensemble of plasmid classification tools
Updated
Aug 3, 2022
Shell
A Python based server for making Gibson cloning a little faster
Updated
Feb 24, 2019
Python
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Updated
Mar 16, 2022
Python
Yeast pathway kit promoter and terminator vectors
Updated
May 2, 2022
Jupyter Notebook
Targeted Detection and Reconstruction of Plasmids
Updated
Aug 19, 2022
Python
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