fasta

Star

Here are 350 public repositories matching this topic...

shenwei356 / seqkit

Star

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

golang bioinformatics cross-platform tool toolkit fasta manipulation sequence fastq

Updated Apr 3, 2023
Go

torognes / vsearch

Star

Versatile open-source tool for microbiome analysis

search bioinformatics clustering metagenomics chimera fasta microbiome fastq metabarcoding amplicon sequence-alignment

Updated May 12, 2023
C++

TimothyStiles / poly

Sponsor

Star

A Go package for engineering organisms.

bioinformatics synthetic-biology computational-biology dna genbank fasta molecular-biology synbio bioengineering primer-design golden-gate dna-barcode plasmids dna-barcoding codon-optimizer genetic-engineering engineering-organisms sequence-hashing

Updated May 7, 2023
Go

jupyterlab / jupyter-renderers

Star

Renderers and renderer extensions for JupyterLab

geojson plotly vega vega-lite jupyterlab fasta katex jupyterlab-extension

Updated Apr 12, 2023
HTML

seqan / seqan

Star

SeqAn's official repository.

high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics suffixarray sequence-alignments seqan htslib sam-bam

Updated May 14, 2023
C++

mdshw5 / pyfaidx

Star

Efficient pythonic random access to fasta subsequences

python bioinformatics genomics indexing dna protein fasta samtools bgzf

Updated Feb 28, 2023
Python

seqan / seqan3

Star

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

bioinformatics modern cpp17 fasta blast seqan fastq samtools sequence-alignment fm-index sequence-analysis cpp20 cpp-concepts

Updated May 15, 2023
C++

samtools / htsjdk

Star

A Java API for high-throughput sequencing data (HTS) formats.

java genomics ngs sequencing sam vcf dna java-api fasta bam cram

Updated Apr 17, 2023
Java

bioSyntax / bioSyntax

Star

Syntax highlighting for computational biology

syntax-highlighting vim less bioinformatics pdb sublime-text computational-biology gedit vcf fasta bam

Updated Mar 4, 2023
Shell

edgardomortiz / vcf2phylip

Star

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid

Updated May 9, 2023
Python

lmdu / pyfastx

Star

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

python bioinformatics genome biology assembly dna fasta sequence fastq

Updated Apr 19, 2023
C

igordot / genomics

Star

A collection of scripts and notes related to genomics and bioinformatics

science workflow bioinformatics nanopore genomics sequencing vcf dna fasta gtf illumina fastq fast5

Updated Sep 13, 2022
R

mbhall88 / rasusa

Star

Randomly subsample sequencing reads to a specified coverage

rust coverage bioinformatics random fasta fastq genome-analysis downsample subsampling

Updated Apr 6, 2023
Rust

BjornFJohansson / pydna

Star

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

python bioinformatics jupyter anaconda simulation biology jupyter-notebook dna biopython genbank gel fasta jupyter-notebooks pydna gel-simulation gibson-assembly cloning-strategies gel-electrophoresis assembly-strategies

Updated May 15, 2023
Jupyter Notebook

divonlan / genozip

Star

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

compression gzip genomics sam vcf fasta bam fastq gvf samtools bwa 23andme cram bgzip

Updated May 3, 2023
C

torognes / swarm

Star

A robust and fast clustering method for amplicon-based studies

bioinformatics clustering fasta sequence microbiome metabarcoding

Updated Apr 25, 2023
C++

Gabaldonlab / redundans

Star

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

python bioinformatics pipeline genomics assembly docker-image polymorphic gap closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs

Updated Dec 21, 2022
Perl

eead-csic-compbio / get_homologues

Star

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

annotation clustering plants genbank fasta bacteria transcriptome pangenome pangene

Updated May 15, 2023
Perl

chrovis / cljam

Star

A DNA Sequence Alignment/Map (SAM) library for Clojure

clojure bioinformatics genomics sam vcf fasta bigwig bed bam fastq bcf wig gff 2bit

Updated Apr 27, 2023
Clojure

smaegol / PlasFlow

Star

Software for prediction of plasmid sequences in metagenomic assemblies

tensorflow prediction classification fasta plasmid metagenomes contigs metagenome plasmid-sequences metagenome-assembly plasmids plasflow

Updated Jun 28, 2021
Python

Improve this page

Add a description, image, and links to the fasta topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the fasta topic, visit your repo's landing page and select "manage topics."

Learn more